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Table 1 AUC values in S. cerevisiae datasets with respect to ontology BP, CC and MF (IEA+ and IEA-)

From: A novel gene functional similarity calculation model by utilizing the specificity of terms and relationships in gene ontology

Methods

BP_IEA+

CC_IEA+

MF_IEA+

BP_IEA-

CC_IEA-

MF_IEA-

STE

0.8234

0.8317

0.7441

0.8724

0.8343

0.7460

simGIC

0.8198

0.8223

0.7497

0.8647

0.8392

0.7023

Resnik

0.7888

0.8211

0.6987

0.7949

0.8043

0.6182

WIS

0.8184

0.8249

0.7371

0.8643

0.8122

0.7259

simUI

0.8095

0.8213

0.7253

0.8447

0.8004

0.7098

VSM

0.8115

0.8246

0.7294

0.8477

0.8033

0.7088

Wang

0.7932

0.8028

0.7110

0.8262

0.7948

0.6905

  1. The best results are in bold