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Table 2 AUC values in H. sapiens datasets with respect to ontology BP, CC and MF (IEA+ and IEA-)

From: A novel gene functional similarity calculation model by utilizing the specificity of terms and relationships in gene ontology

Methods

BP_IEA+

CC_IEA+

MF_IEA+

BP_IEA-

CC_IEA-

MF_IEA-

STE

0.8624

0.7504

0.7228

0.7940

0.6839

0.6907

simGIC

0.8381

0.7614

0.7597

0.7839

0.6867

0.6730

Resnik

0.6696

0.6714

0.7033

0.7264

0.6638

0.6662

WIS

0.8049

0.6734

0.6637

0.7718

0.6604

0.6835

simUI

0.7921

0.6484

0.6208

0.7734

0.6586

0.6836

VSM

0.7896

0.6564

0.6297

0.7825

0.6675

0.6732

Wang

0.7334

0.6260

0.5824

0.7404

0.6466

0.6474

  1. The best results are in bold