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Table 3 Pearson’s correlation coefficient with gene expression dataset with respect to ontology BP, CC and MF (IEA+ and IEA-)

From: A novel gene functional similarity calculation model by utilizing the specificity of terms and relationships in gene ontology

Methods

BP_IEA+

CC_IEA+

MF_IEA+

BP_IEA-

CC_IEA-

MF_IEA-

STE

0.4048

0.4197

0.2411

0.4403

0.5412

0.1998

simGIC

0.4053

0.4212

0.2546

0.4418

0.5540

0.1972

Resnik

0.3135

0.4405

0.2219

0.3818

0.5286

0.1439

WIS

0.3993

0.4125

0.2457

0.4318

0.5162

0.1980

simUI

0.3799

0.4003

0.2241

0.4252

0.5151

0.1889

VSM

0.3416

0.3621

0.1941

0.4024

0.4999

0.1806

Wang

0.2160

0.2292

0.0695

0.3141

0.4046

0.0563

  1. The best results are in bold