Table 2 HiCmapTools runtimes for different query modes, map resolutions, and map formats of the fly map (dm3), where runtimes are recorded in user mode
Resolution | Format | Size | Query | Per.Test | Time (sec) | ps |
|---|---|---|---|---|---|---|
30 k | bin-contact/text | 67 MB | bait | 100 | 6.23 | Section “bait query example” |
1 k | bin-contact/binary | 2.4 GB | loop | 0 | 11.34 | Section “TAD loop” |
100 | 11.45 | |||||
TAD | 0 | 11.32 | Section “TAD intra-density” | |||
100 | 14.30 | |||||
bin-contact/text | 3.2 GB | loop | 0 | 345.62 | ||
100 | 525.14 | |||||
TAD | 0 | 344.43 | ||||
100 | 525.54 |