Table 1 Running time (s) for CSD on the large datasets with 1000 iterations
From: csdR, an R package for differential co-expression analysis
Implementation | Cores | Step 1 | Step 2 | Step 3 | Total |
|---|---|---|---|---|---|
Original | 1 | 1,261,628 | 4900 | 116,051 | 1,382,579 |
csdR | 1 | 41,387 | 79 | 11 | 41,477 |
csdR | 5 | 20,737 | 50 | 15 | 20,802 |
csdR | 10 | 15,488 | 45 | 13 | 15,546 |
csdR | 15 | 15,192 | 50 | 12 | 15,254 |