Table 2 Study parameters for the second simulation scenario resulting in 45 settings in total
From: Evaluation of tree-based statistical learning methods for constructing genetic risk scores
Parameter | Considered realizations |
|---|---|
Odds ratio of gene-gene interaction | 1.2, 1.5, 1.8, 2.1, 2.4 |
Amount of noise SNPs | 5, 15, 45 |
Interacting SNPs (j, k) | (1, 2), (1, 4), (4, 5) |
Sample size | 2000 |
Prevalence | Resulting in balanced data sets |
MAF | Randomly chosen from [0.15, 0.45] |
Repetitions | 100 |