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Table 6 Comparison of HGGA, miniasm, and Kermit on the simulated C. elegans data

From: HGGA: hierarchical guided genome assembler

Method

# of contigs

NGA50 (bp)

Genome fraction

Misassemblies

BUSCO complete (%)

Reads mapped (%)

Runtime (min)

Peak memory (MB)

Miniasm

126

1,982,361

99.443

10

98.1

99.75

20

18,332

Kermit

83

2,819,353

99.535

7

98.3

99.75

23

19,578

HGGA

31

5,901,436

99.595

14

97.2

99.78

51

1,334

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BMC Bioinformatics

ISSN: 1471-2105

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