Table 7 Comparison of HGGA, miniasm, and Kermit on the C. elegans data with real genetic linkage map and reads
Method | # of contigs | NGA50 (bp) | Genome fraction | Misassemblies | BUSCO complete (%) | Reads mapped (%) | Runtime (h) | Peak memory (MB) |
|---|---|---|---|---|---|---|---|---|
Miniasm | 472 | 1,582,439 | 99.478 | 420 | 95.2 | 94.43 | 5.52 | 88,371 |
Kermit | 95 | 1,864,384 | 99.187 | 197 | 95.8 | 93.41 | 4.88 | 88,028 |
HGGA | 217 | 1,927,968 | 99.072 | 195 | 95.1 | 94.61 | 9.07 | 9,101 |