Table 8 Comparison of HGGA, miniasm, and Kermit on the A. thaliana data with real reads and simulated genetic linkage map
Method | # of contigs | NGA50 (bp) | Genome fraction | Misassemblies | BUSCO Complete (%) | Reads mapped (%) | Runtime (h) | Peak memory (MB) |
|---|---|---|---|---|---|---|---|---|
Miniasm | 712 | 2,552,623 | 98.766 | 346 | 84.5 | 96.63 | 2.37 | 34,128 |
Kermit | 123 | 2,552,489 | 98.185 | 174 | 85.1 | 89.07 | 2.08 | 34,486 |
HGGA | 136 | 4,173,314 | 98.247 | 242 | 86.3 | 95.87 | 3.41 | 10,050 |