Skip to main content

Table 5 Comparison of main functions between CRISPRviz, CRISPRStudio and CrisprVi

From: CrisprVi: a software for visualizing and analyzing CRISPR sequences of prokaryotes

No Main functions CRISPRviz CRISPRStudio CrisprVi
1 Input files FASTA FASTA GFF, FASTA
2 Detect CRISPRs (DRs/spacers) MinCED CRISPRDetect ×
3 Color-symbol system Glyphicon + color Diamond + color Number + strand + color
4 Change color × ×
5 Pairwise alignment of spacers Needleman-Wunsch algorithm fasta36 [40] Modified pairwise alignment
6 Guide tree UPGMA UPGMA UPGMA
7 Show DRs and spacers ×
8 Show repeats only
9 Show spacers only ×
10 Align spacers
11 Sort by length ×
12 Highlight all identical sequences ×
13 Show information of specific graphics × ×
14 Statistics of DRs/spacers × ×
15 Consensus DR/spacer sequences finding × ×
  1. ‘×’ means that the corresponding tool does not have the function
  2. ‘√’ means that the corresponding tool has the function