Table 1 Genes selected as stable reference genes from each normalization scenario
Normalization strategy | Transcript ID | Gene symbol | Gene biotype | Intraclass correlation |
|---|---|---|---|---|
Per-library-size | ENST00000643905 | 0.915 | ||
ENST00000439211 | DHFR | Protein coding | 0.877 | |
ENST00000582787 | SP2-DT | lncRNA | 0.873 | |
ENST00000342992 | TTN | Protein coding | 0.866 | |
ENST00000361681 | MT-ND6 | Protein coding | 0.864 | |
ENST00000371470 | MAGOH | Protein coding | 0.846 | |
ENST00000234256 | SLC1A4 | Protein coding | 0.842 | |
ENST00000341162 | FCF1 | Protein coding | 0.841 | |
ENST00000480046 | METTL2B | Protein coding | 0.839 | |
ENST00000295955 | RPL9 | Protein coding | 0.828 | |
Per-total-RNA | ENST00000445125 | Processed pseudogene | 0.715 | |
ENST00000312184 | TMEM70 | Protein coding | 0.579 | |
ENST00000552002 | CHURC1 | Protein coding | 0.559 | |
ENST00000357033 | DMD | Protein coding | 0.559 | |
ENST00000275300 | SLC22A3 | Protein coding | 0.555 | |
ENST00000496823 | BCL6 | Protein coding | 0.548 | |
ENST00000546248 | TRDN | Protein coding | 0.522 | |
ENST00000309881 | CD36 | Protein coding | 0.505 | |
ENST00000005178 | PDK4 | Protein coding | 0.496 | |
ENST00000522603 | ASPH | Protein coding | 0.492 | |
Per-sample-size | ENST00000496823 | BCL6 | Protein coding | 0.536 |
ENST00000546248 | TRDN | Protein coding | 0.497 | |
ENST00000216019 | DDX17 | Protein coding | 0.461 | |
ENST00000005178 | PDK4 | Protein coding | 0.458 | |
ENST00000361915 | AGL | Protein coding | 0.421 | |
ENST00000418381 | 0.416 | |||
ENST00000294724 | AGL | Protein coding | 0.405 | |
ENST00000366645 | EXOC8 | Protein coding | 0.391 | |
ENST00000261349 | LRP6 | Protein coding | 0.384 | |
ENST00000306270 | IBTK | Protein coding | 0.328 |