Table 1 Time spent in processing data for one-hot, k-gram and k-mer (seconds)
RBPs | One-hot(s) | k-gram(s) | k-mer(s) |
|---|---|---|---|
C17ORF85 PAR-CLIP | 1.21 | 166.94 | 56.26 |
CAPRIN1 PAR-CLIP | 4.43 | 698.55 | 236.86 |
C22ORF28 PAR-CLIP | 5.17 | 776.85 | 264.13 |
ALKBH5 PAR-CLIP | 0.72 | 108.97 | 36.60 |
ELAVL1 HITS-CLIP | 4.86 | 730.46 | 247.91 |
HNRNPC iCLIP | 10.34 | 1707.43 | 544.39 |
SFRS1 HITS-CLIP | 9.56 | 1646.51 | 557.26 |
AGO2 HITS-CLIP | 21.79 | 3801.02 | 1310.53 |
TDP43 iCLIP | 39.82 | 6768.75 | 2195.09 |
AGO1-4 PAR-CLIP | 17.09 | 2875.98 | 975.49 |
TIAL1 iCLIP | 21.40 | 3501.71 | 1181.97 |
TIA1 iCLIP | 7.76 | 1350.94 | 454.44 |
EWSR1 PAR-CLIP | 8.70 | 1373.17 | 467.09 |
ELAVL1 PAR-CLIP(A) | 11.60 | 2005.25 | 677.86 |
ELAVL1 PAR-CLIP(B) | 5.19 | 847.13 | 288.93 |
FUS PAR-CLIP | 18.47 | 2863.57 | 994.37 |
PUM2 PAR-CLIP | 5.65 | 904.35 | 307.65 |
IGF2BP1-3 PAR-CLIP | 4.61 | 696.19 | 234.87 |
MOV10 PAR-CLIP | 7.79 | 1214.91 | 429.22 |
ELAVL1 PAR-CLIP(C) | 58.01 | 9836.02 | 3327.17 |
ZC3H7B PAR-CLIP | 12.16 | 1955.89 | 656.31 |
PTB HITS-CLIP | 24.31 | 3705.75 | 1285.36 |
TAF15 PAR-CLIP | 4.78 | 702.27 | 237.64 |
QKI PAR-CLIP | 6.17 | 982.99 | 328.93 |
Sum | 311.58 | 51221.59 | 17296.34 |
Average | 12.98 | 2134.23 | 720.68 |