Prioritization of cancer driver gene with prize-collecting steiner tree by introducing an edge weighted strategy in the personalized gene interaction network

Table 1 Results of average precision of PDGPCS and other methods (or strategies) on BLCA, BRCA, COAD and HNSC cancers

Method/Strategy	BLCA	BRCA	COAD	HNSC
PDGPCS	0.3623	0.2968	0.4534	0.5512
PRODIGY	0.3311	0.2265	0.2479	0.5134
SCS	0.0152	0	0.0162	0
Degree	0.0262	0.1214	0.0735	0.0807
Betweenness	0.2260	0.0828	0.2198	0.2241
Closeness	0.0101	0.0250	0.0290	0.0163
Same weight	0.2330	0.1678	0.2545	0.3064
Original network weight	0.3160	0.2265	0.4292	0.4314
Random weight	0.2383	0.0358	0.1589	0.1802
Tumor sample	0.0077	0.0027	0.0235	0.0102

ISSN: 1471-2105