Prioritization of cancer driver gene with prize-collecting steiner tree by introducing an edge weighted strategy in the personalized gene interaction network

Table 2 Results of average Recall of PDGPCS and other methods (or strategies) on BLCA, BRCA, COAD and HNSC cancers

Method/Strategy	BLCA	BRCA	COAD	HNSC
PDGPCS	0.018	0.0126	0.0185	0.0221
PRODIGY	0.0177	0.0103	0.0145	0.0208
SCS	0.0011	0	0.001	0
Degree	0.0022	0.0041	0.0043	0.0050
Betweenness	0.01308	0.0051	0.0066	0.01118
Closeness	0.0008	0.0014	0.0022	0.0013
Same weight	0.0136	0.0087	0.0128	0.0148
Original network weight	0.0174	0.0103	0.0181	0.01908
Random weight	0.0125	0.0028	0.0073	0.0096
Tumor sample	0.01537	0.0102	0.0170	0.0186

ISSN: 1471-2105