Prioritization of cancer driver gene with prize-collecting steiner tree by introducing an edge weighted strategy in the personalized gene interaction network

Table 3 Results of F-scores of PDGPCS and other methods (or strategies) on BLCA, BRCA, COAD and HNSC cancers

Method/Strategy	BLCA	BRCA	COAD	HNSC
PDGPCS	0.0343	0.0236	0.0348	0.0418
PRODIGY	0.0332	0.0194	0.0272	0.0393
SCS	0.0020	0	0.0021	0
Degree	0.0041	0.0077	0.0081	0.0093
Betweenness	0.0245	0.0095	0.0125	0.0208
Closeness	0.00153	0.0027	0.00420	0.0024
Same weight	0.0255	0.0164	0.0241	0.0278
Original network weight	0.0327	0.0194	0.0341	0.0358
Random weight	0.0237	0.0053	0.0138	0.0181
Tumor sample	0.0288	0.0192	0.0320	0.0350

ISSN: 1471-2105