Table 4 Compression time under different references
From: SparkGC: Spark based genome compression for large collections of genomes
Chromosome | Method | Compression time (hour) under different references | AVG | SD | |||||
|---|---|---|---|---|---|---|---|---|---|
HG13 | HG16 | K131 | YH | Huref | HG00096 | ||||
Chr1 | HiRGC | 11.95 | 7.40 | 8.75 | 8.82 | 10.01 | 6.55 | 8.91 | 1.75 |
SCCG | 21.25 | 21.91 | 37.73 | 37.11 | 39.86 | 36.66 | 32.42 | 7.73 | |
memRGC | 20.49 | 12.05 | 16.09 | 18.45 | 16.53 | 11.07 | 15.78 | 3.32 | |
HRCM | 11.19 | 8.28 | 9.60 | 8.40 | 9.76 | 5.72 | 8.82 | 1.69 | |
SparkGC | 0.70 | 0.54 | 0.57 | 0.49 | 0.63 | 0.40 | 0.56 | 0.10 | |
Chr13 | HiRGC | 2.67 | 2.43 | 2.37 | 2.45 | 2.48 | 2.41 | 2.47 | 0.10 |
SCCG | / | 24.15 | 18.61 | 23.44 | 12.37 | 10.17 | / | / | |
memRGC | 9.07 | 8.13 | 14.62 | 9.82 | 11.25 | 8.23 | 10.19 | 2.25 | |
HRCM | 1.64 | 1.43 | 1.47 | 1.40 | 1.44 | 1.25 | 1.44 | 0.11 | |
SparkGC | 0.2 | 0.18 | 0.19 | 0.17 | 0.16 | 0.15 | 0.18 | 0.01 | |