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Table 10 Comparative test results of predicting sequence with pseudoknot

From: LTPConstraint: a transfer learning based end-to-end method for RNA secondary structure prediction

Model

Pseudoknot_128

Pseudoknot_512

Precision

Recall

F1-score

Precision

Recall

F1-score

LTPConstraint

0.9314

0.8769

0.9034

0.7477

0.7151

0.7310

ProbKnot

0.5305

0.5522

0.5411

0.3772

0.4136

0.3946

Knotty

0.5317

0.6708

0.5932

0.3290

0.3886

0.3563

  1. In the training of LTPConstraint, two kinds of pre-trained model are still trained by using the data of Rfam_128 and Rfam_512
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BMC Bioinformatics

ISSN: 1471-2105

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