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Fig. 3 | BMC Bioinformatics

Fig. 3

From: Joint analysis of scATAC-seq datasets using epiConv

Fig. 3

Benchmarking of epiConv on integrating three mouse lung datasets. a Low dimensional embedding of mouse lung data before and after batch correction. AT1, alveolar type 1 cell; AT2, alveolar type 2 cell. b EpiConv clusters AT2 cells and Ciliated/Club cells into three clusters, each with its unique accessible peaks. c Cell-type specific signatures of AT2, Ciliated/Club 1 and Ciliated/Club 2 cells. d CisTopic detects the difference between AT2 and Ciliated/Club cells on single dataset but failed on integrated datasets.

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BMC Bioinformatics

ISSN: 1471-2105

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