Skip to main content
Fig. 3 | BMC Bioinformatics

Fig. 3

From: SMaSH: a scalable, general marker gene identification framework for single-cell RNA-sequencing

Fig. 3

Marker genes for the broad mouse brain cell types. A The mean |Shapley value| for the top 30 ranked marker genes across all broad cell types of the mouse brain, before additional filtering and sorting, using SMaSH’s network mode. Different colours indicate the different class contributions which that particular gene explains. B the final three markers for each class/broad cell type are shown, with the colour profile corresponding to the mean logarithm of the gene expression and a pattern uniquely matching specific markers to specific cell types

Back to article page