Table 1 Single-cell RNA-sequencing data-sets in this study
From: SMaSH: a scalable, general marker gene identification framework for single-cell RNA-sequencing
Data-set | Technology | Cells | Genes | \(\#\) Cell types | References |
|---|---|---|---|---|---|
Human lung cancer (broad) | 10X scRNA-seq | 54,574 | 18,612 | 7 | N.A. |
Human lung cancer (cell sub-types) | 10X scRNA-seq | 54,574 | 18,612 | 34 | N.A. |
Mouse brain (broad) | Single nucleus RNA-seq | 40,532 | 31,053 | 9 | [17] |
Mouse brain (cell sub-types) | Single nucleus RNA-seq | 40,532 | 31,053 | 31 | [17] |
Zeisel | 10X scRNA-seq | 3005 | 4000 | 7 | [18] |
CITE-seq | CITE-seq | 8617 | 500 | 13 | [19] |
Paul15 | MARS-seq | 2730 | 3451 | 10 | [20] |
Human foetal liver | 10X scRNA-seq | 65,712 | 19,572 | 18 | [21] |
Human foetal organs | 10X scRNA-seq | 211,754 | 23,054 | 40 | [21] |