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Table 2 Marker gene misclassification rates in organs of origin in early foetal development

From: SMaSH: a scalable, general marker gene identification framework for single-cell RNA-sequencing

Data-set

scGeneFit

RankCorr

SMaSH (DNN)

SMaSH (RF)

SMaSH (BRF)

SMaSH (XGBoost)

HFO skin versus kidney versus liver

(13.9, 0.85)

(5.2, 0.95)

(1.1, 0.99)

(1.4, 0.99)

(1.8, 0.98)

(1.2, 0.99)

  1. Performance in early foetal organ data, including the four different models implemented in SMaSH. All metrics are summarised as (M, \(F_{1}\)) tuples. The top 2 performing models are indicated in bold for each data-set
  2. HFO Human foetal organs
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BMC Bioinformatics

ISSN: 1471-2105

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