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Table 3 Genes/proteins identified as parents of the treatment response by DAGBagM, bnlearnD and mDAG based on Retro-ova protein and RNA data

From: DAGBagM: learning directed acyclic graphs of mixed variables with an application to identify protein biomarkers for treatment response in ovarian cancer

Method

Protein

RNA

DAGBagM

SAMM50*, NDUFS4, NQO2, ME1, UQCRC1, AIFM1, NDUFAB1, HSPA9, RETSAT, NDUFB4, CYB5A

SLC25A3, CPT1A, NMT1, AGPAT3, TIMM50*

bnlearnD

MGST3, PEX14, FAH, SUCLA2

HTRA2, STAT5A*, SLC25A3

mDAG

FAH, TIMM50*

STAT5A*, COX6B1, NDUFB7

  1. Genes with * indicates their association with overall survival (Cox regression p value < 0.05) using the complete (n = 174) Retro-Ova data
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BMC Bioinformatics

ISSN: 1471-2105

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