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Table 1 Simulation settings for the annotation scenarios

From: Accounting for overlapping annotations in genomic prediction models of complex traits

 

Annotation enrichment

Strongly

Moderately

Weakly

Unenriched

SNP effect class

 Large

5

2

–

–

 Medium

300

100

20

–

 Low/null

150

300

400

450

Scenario

 A

1

1

–

–

 B

1

1

1

1

 C

–

2

1

1

 D

2

2

3

2

  1. We defined 4 levels of non-null SNP enrichment for simulated annotations (top part of the table) that can be mixed and matched to construct various scenarios (bottom part of the table). The top part shows the number of SNPs of each size effect class (rows) used to construct each level of annotation enrichment (columns). The bottom part indicates the number of each type of annotation enrichment (columns) used to construct each scenario (rows)
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BMC Bioinformatics

ISSN: 1471-2105

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