Table 1 Evaluation of cryo-EM density graph node locations against all atomic locations contained in the PDB-deposited structure file
From: Neural representations of cryo-EM maps and a graph-based interpretation
EMDB ID | PDB ID | Resolution (Å) | RMSD (Å) | Sensitivity (1 Å) | Specificity (1 Å) |
|---|---|---|---|---|---|
Atomic resolution density graphs | |||||
11668 | 7a6a | 1.15 | 0.138 | 87.98 | 96.21 |
11638 | 7a4m | 1.22 | 0.192 | 87.00 | 88.81 |
11103 | 6z6u | 1.25 | 0.147 | 88.73 | 95.34 |
11669 | 7a6b | 1.33 | 0.151 | 84.25 | 94.32 |
22657 | 7k3v | 1.34 | 0.226 | 78.82 | 89.44 |
11121 | 6z9e | 1.55 | 0.291 | 84.44 | 66.28 |