Comparative transcriptomics analysis pipeline for the meta-analysis of phylogenetically divergent datasets (CoRMAP)

Table 3 DEOGGs identified by CoRMAP in both MC and MT by the TPM and TMM (Trimmed Mean of M-values) expression value. FC means the fold-change relative to Control. The reported p-value (at a 5% level) is non-adjusted. OGGs that were not differential expressed filtered by p-value from TMM were represented with a dash

Gene	Group	MT				MC
Name	Number	Log₂FC(TPM)	p− value (TPM)	Log₂FC (TMM)	p− value (TMM)	Log₂FC(TPM)	p− value (TPM)	Log₂FC (TMM)	p− value (TMM)
T4S1	10,016	− 1.10	0.02	− 1.10	0.02	− 2.01	0.04	− 7.55	0.00
ESS2	10,246	1.01	0.03	1.01	0.03	2.09	< 0.01	1.98	0.01
WDR92	12,036	− 1.59	0.01	− 1.59	0.01	3.59	< 0.01	1.77	0.02
G137C	12,213	0.82	0.02	0.82	0.02	2.11	0.03	− 3.67	0.02
CAH2	14,602	− 0.62	0.04	–	–	− 3.13	< 0.01	–	–
ECHB	2726	− 0.54	0.03	–	–	− 2.55	< 0.01	–	–
RBM28	3334	− 0.90	0.03	− 0.90	0.03	2.24	< 0.01	2.40	0.01
STRN	34,631	0.77	0.04	0.77	0.04	− 1.81	0.02	− 1.76	0.05
FAS	34,817	0.96	0.04	–	–	2.63	0.01	–	–
LMO7	34,823	1.11	0.04	1.11	0.04	1.87	0.01	7.05	0.00
BD1L1	34,841	1.38	0.01	1.40	0.01	− 2.96	< 0.01	− 5.47	0.00
PCDH1	34,903	0.86	0.04	0.86	0.04	2.62	0.01	− 3.61	0.02
GCSP	34,931	− 1.01	0.05	− 1.01	0.05	− 2.24	0.03	− 6.81	0.00
MYCB2	35,154	1.83	0.00	1.82	0.00	1.10	0.04	5.54	0.00
DCNL4	4130	0.55	0.04	–	–	− 1.68	0.01	–	–
ST2B1	4606	− 0.88	0.05	–	–	3.70	< 0.01	–	–
CRIM1	4717	0.69	0.02	0.69	0.02	2.92	< 0.01	− 2.90	0.01
UNC80	5200	0.98	0.01	0.98	0.01	2.58	< 0.01	1.49	0.03
SLIRP	5326	− 0.44	0.05	–	–	− 1.11	0.02	–	–
FCRL2	6903	1.01	< 0.01	–	–	3.19	0.00	–	–
GPC5B	6970	− 0.47	0.04	− 0.47	0.04	1.87	0.02	− 1.57	0.04
MLC1	8131	− 0.48	0.04	− 0.48	0.04	− 3.05	< 0.01	− 4.11	0.00
ASTRB(ASTRA)	8230	0.92	0.01	–	–	1.68	0.03	–	–
TAU	8242	0.49	0.04	0.49	0.04	− 1.36	0.01	1.84	0.03

ISSN: 1471-2105