Table 2 Genome binning, clustering results, and complexity analysis for case studies

BioProject

PRJNA777294

PRJEB20421

PRJNA551026

Original Study

Bos et al. 2022

Michaud et al. 2017

Williams et al. 2020

Number of samples

44

64

17

Gigabases

237

90

9

Prokaryotic

MAGs (Original Study)

37

8

0

MAGs (Sample-specific)

194(91)^c

214

15

MAGs (Multi-sample)^b

25(1)^c

3

5

MAGs (Total)

219

217

20

SLCs

154

48

12

ORFs

735406

652008

50711

ORFs^a

706092

615479

47954

SSOs

483864

140638

25848

Genomic FCR

0.296803653

0.778801843

0.4

Functional FCR^a

0.314729525

0.771498296

0.460983442

Eukaryotic

MAGs (Original Study)

0

17^d

0

MAGs (Sample-specific)

5(4)^c

3

0

MAGs (Multi-sample)^b

0

0

0

MAGs (Total)

5

3

0

SLCs

4

1

Not applicable

ORFs

78750

49958

Not applicable

ORFs (Orthogroups)^a

78171

46709

Not applicable

SSOs

63661

15335

Not applicable

Genomic FCR

0.2

0.666666667

Not applicable

Functional FCR^a

0.185618708

0.671690681

Not applicable

Viral

MAGs (Original Study)

0

6^d

0

MAGs (Sample-specific)

119

345

18

MAGs (Multi-sample)^b

Not applicable

Not applicable

Not applicable

MAGs (Total)

119

345

18

SLCs

81

69

12

ORFs

1317

20519

602

ORFs (Orthogroups)^a

1279

20397

598

SSOs

686

3436

393

Genomic FCR

0.319327731

0.8

0.333333333

Functional FCR^a

0.463643471

0.831543854

0.342809365