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Table 1 (a) Raw results of the three software packages assessed on the samples of 185 patients. Any result from a software is considered as a false positive as long as its quantification is at least 1% and it is not detected by the reference method. (b) Corrected results, after taking into account two Sanger sequencing to verify the two FLT3-ITDs detected by two software, and by considering as false positive only FLT3-ITDs detected above 1% by a software in any negative sample

From: Frugal alignment-free identification of FLT3-internal tandem duplications with FiLT3r

 

FiLT3r

km

FLT3-ITD-ext

(a)

True pos.

145

134

144

False neg.

0

11

1

False pos.

17

6

9

(b)

True pos.

147

136

144

False neg.

0

11

3

False pos.

0

0

0

Precision

1

1

1

Recall

1

0.93

0.98

F1

1

0.96

0.99