Table 4 Runtimes (in seconds) and corresponding speedups of SparkEC over CloudEC for all datasets and k-mer values
From: SparkEC: speeding up alignment-based DNA error correction tools
Dataset | K | #Nodes | CloudEC | SparkEC | Speedup |
|---|---|---|---|---|---|
D1 | 24 | 5 | 29,862 | 11,951 | 2.5 |
9 | 13,697 | 4429 | 3.1 | ||
13 | 9150 | 2731 | 3.4 | ||
55 | 5 | 21,909 | 9693 | 2.3 | |
9 | 10,135 | 2792 | 3.6 | ||
13 | 6216 | 1785 | 3.5 | ||
D2 | 24 | 5 | 13,307 | 5289 | 2.5 |
9 | 5351 | 1659 | 3.2 | ||
13 | 3309 | 971 | 3.4 | ||
55 | 5 | 8688 | 4035 | 2.2 | |
9 | 3889 | 1250 | 3.1 | ||
13 | 2594 | 700 | 3.7 | ||
D3 | 24 | 5 | 11,609 | 4865 | 2.4 |
9 | 4831 | 1885 | 2.6 | ||
13 | 3167 | 1113 | 2.8 | ||
55 | 5 | 8502 | 4892 | 1.7 | |
9 | 3679 | 1348 | 2.7 | ||
13 | 2616 | 756 | 3.5 | ||
D4 | 24 | 5 | 43,506 | 7473 | 5.8 |
9 | 20,383 | 2484 | 8.2 | ||
13 | 14,334 | 1511 | 9.5 | ||
55 | 5 | 21,723 | 3987 | 5.4 | |
9 | 11,543 | 1146 | 10.1 | ||
13 | 7617 | 648 | 11.8 | ||
D5 | 24 | 5 | 26,959 | 8607 | 3.1 |
9 | 12,611 | 6486 | 1.9 | ||
13 | 7729 | 3927 | 2.0 | ||
55 | 5 | 14,374 | 3698 | 3.9 | |
9 | 5827 | 2233 | 2.6 | ||
13 | 3577 | 1437 | 2.5 | ||
D6 | 24 | 5 | 31,146 | 3286 | 9.5 |
9 | 18,511 | 2047 | 9.0 | ||
13 | 11,232 | 942 | 11.9 | ||
55 | 5 | 17,806 | 2105 | 8.5 | |
9 | 10,021 | 1180 | 8.5 | ||
13 | 6514 | 687 | 9.5 |