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Table 4 Ablation studies on SHS27k and SHS148k datasets

From: Long-distance dependency combined multi-hop graph neural networks for protein–protein interactions prediction

Datasets

Partition scheme

GNN-PPI

−PMHGE

−PAASE

LDMGNN

SHS27K

Random

\(87.91 \pm 0.39\)

\(88.72 \pm 0.44\)

\(89.28 \pm 0.41\)

\(89.34 \pm 0.44\)

 

BFS

\(63.81 \pm 1.79\)

\(68.84 \pm 5.49\)

\(68.61 \pm 3.72\)

\(74.56 \pm 3.03\)

 

DFS

\(74.72 \pm 5.26\)

\(76.92 \pm 4.28\)

\(74.81 \pm 2.78\)

\(78.20 \pm 2.69\)

SHS148K

Random

\(92.26 \pm 0.10\)

\(92.38 \pm 0.08\)

\(92.35 \pm 0.26\)

\(92.54 \pm 0.21\)

 

BFS

\(71.37 \pm 5.33\)

\(69.01 \pm 4.36\)

\(71.63 \pm 3.19\)

\(73.98 \pm 5.51\)

 

DFS

\(82.67 \pm 0.85\)

\(82.77 \pm 1.58\)

\(82.91 \pm 1.19\)

\(83.79 \pm 0.95\)