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Table 3 TADs of mES and mCO Hi-C using DI, ClusterTAD, and TADL SE-RestNet_Human; the corresponding evaluation, the number of CTCF peaks overlapping the TAD boundary based on original boundary and extended positions

From: Pattern recognition of topologically associating domains using deep learning

Method

TAD

# of overlapping CTCF

Number

Size (bin)

Original

Extended

mES

    

 ClusterTAD

1224

46.91

1565

3883

 DI

2200

27.54

2951

3981

 TADL

3732

15.15

2849

4986

mCO

    

 ClusterTAD

1226

46.22

1500

3887

 DI

1519

37.67

1970

2691

 TADL

3390

14.68

2695

4765