Table 1 Runtime, memory and ARI performance benchmarked on the 2 million mouse organogenesis cell atlas dataset
From: SC3s: efficient scaling of single cell consensus clustering to millions of cells
Method | Runtime (hr:min:s) | Peak memory (GB) | ARI |
|---|---|---|---|
SC3s (one k) | 00:11:12 | 22.65 | 0.408 |
SC3s (one k) | 00:21:01 | 26.45 | 0.400 |
Scanpy Leiden | 05:27:17 | 33.83 | 0.536 |
SEURAT | 01:53:54 | 91.36 | 0.257 |
FastPG | 00:15:05 | 72.75 | 0.463 |