Skip to main content

Table 2 Parameter setting evaluation

From: Reconstructing B cell lineage trees with minimum spanning tree and genotype abundances

Parameters

Performance metrics

a

r

t

Median

Median*

Correct paths

×

×

×

3

2

41

×

×

 

4

4

39

×

 

×

4

4

35

×

  

4

4

34

 

×

×

4

4

41

  

×

4

4

41

 

×

 

4

4

35

   

4

4

35

  1. ‘×’ indicates that the parameter was turned on, while an empty box indicates that it was turned off
  2. Median* is the median without considering the outliers. ‘Correct paths’ reports the number of correct reconstructed paths (from leaf to root) in the tree, that is, when the GED path-based distance was zero
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us