Table 3 Resulting assembly size and taxonomic, functional, and core content recovery of jEUKebox outputs after raw read simulation and re-assembly with eukrhythmic
Community | Simulated Contigs | Number of Assembled Contig Clusters | Assembly Size (MB) | MMETSP Genera | Designer Genera | Recovered Genera | MMETSP Species | Designer Species | Recovered Species | Designer Distinct KOs | Recovered Distinct KOs |
|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 51741 \(\pm\) 6031 | 32.6 \(\pm\) 3.6 | 59489 \(\pm\) 4825 | 3.8 \(\pm\) 0.5 | 4.4 \(\pm\) 1.1 | 3.1 \(\pm\) 1.1 | 3.9 \(\pm\) 0.4 | 4.9 \(\pm\) 0.6 | 3.5 \(\pm\) 1.3 | 3435.1 \(\pm\) 429.6 | 1941.2 \(\pm\) 161.5 |
2 | 44180 \(\pm\) 3486 | 26.1 \(\pm\) 2.6 | 49354 \(\pm\) 4948 | 3.2 \(\pm\) 0.9 | 4.4 \(\pm\) 1.2 | 3.4 \(\pm\) 0.7 | 3.4 \(\pm\) 0.7 | 4.6 \(\pm\) 1.1 | 3.2 \(\pm\) 0.7 | 3422.5 \(\pm\) 412.1 | 1816.9 \(\pm\) 188.8 |
3 | 47862 \(\pm\) 7756 | 28.0 \(\pm\) 5.2 | 53379 \(\pm\) 6921 | 4.4 \(\pm\) 0.9 | 5.0 \(\pm\) 0.0 | 3.6 \(\pm\) 0.9 | 4.5 \(\pm\) 0.9 | 5.2 \(\pm\) 0.5 | 3.2 \(\pm\) 0.7 | 3346.4 \(\pm\) 369.2 | 1879.2 \(\pm\) 154.7 |
4 | 49911 \(\pm\) 6524 | 29.5 \(\pm\) 4.7 | 57262 \(\pm\) 6752 | 5.1 \(\pm\) 1.4 | 5.9 \(\pm\) 1.1 | 3.2 \(\pm\) 1.0 | 5.8 \(\pm\) 0.9 | 6.6 \(\pm\) 0.9 | 3.4 \(\pm\) 0.9 | 3284.8 \(\pm\) 204.2 | 1895.8 \(\pm\) 149.2 |
5 | 44262 \(\pm\) 6254 | 25.9 \(\pm\) 3.2 | 50042 \(\pm\) 5395 | 3.8 \(\pm\) 0.9 | 4.6 \(\pm\) 1.1 | 2.8 \(\pm\) 0.7 | 3.9 \(\pm\) 0.8 | 5.0 \(\pm\) 0.9 | 2.8 \(\pm\) 0.7 | 3226.0 \(\pm\) 545.6 | 1720.6 \(\pm\) 127.9 |
6 | 52795 \(\pm\) 5152 | 31.2 \(\pm\) 2.9 | 59826 \(\pm\) 4076 | 5.6 \(\pm\) 1.3 | 6.2 \(\pm\) 1.2 | 2.8 \(\pm\) 0.7 | 6.4 \(\pm\) 0.9 | 7.2 \(\pm\) 0.7 | 3.2 \(\pm\) 1.0 | 3049.9 \(\pm\) 355.6 | 1882.6 \(\pm\) 156.9 |