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Table 11 The hyperparameter grid used in the hyperparameter optimization

From: A fair experimental comparison of neural network architectures for latent representations of multi-omics for drug response prediction

Parameter

Values

Batch size

\(\{8, 16, 32\}\)

Dropout rate

\(\{0.1, 0.3, 0.5, 0.7\}\)

Epochs

\(\{2..20\}\)

Gamma

\(\{0.0, 0.1, 0.3, 0.5\}\)

Layer dimension

\(\{32, 64, 128, 256, 512, 1024\}\)

Learning rate

\(\{0.001, 0.01\}\)

Margin

\(\{0.2, 0.5, 1\}\)

Weight decay

\(\{0.0001, 0.001, 0.01, 0.05, 0.1\}\)

PCA variance threshold

\(\{0.9, 0.95, 0.975, 0.99\}\)