1 month | 2 months | 3 months | 4 months | 5 months | |
---|---|---|---|---|---|
A (unit: second) | |||||
1. Comet search | 34,287.5 | 35,073.6 | 35,052.1 | 34,840.2 | 35,559.4 |
2-a. Comet-P (without E-value) | 635.9 | 1282.6 | 1439.5 | 1532.8 | 2045.3 |
2-b. Comet-E (with E-value) | 2075.7 | 2779.3 | 2834.0 | 2960.5 | 3476.1 |
2.1. Database separation | 3.0 | 3.0 | 3.0 | 3.2 | 3.1 |
2.2. Deletion | 344.3 | 410.0 | 459.0 | 498.8 | 598.3 |
2.2.1. Extract spectra | 15.6 | 15.8 | 15.0 | 16.3 | 15.7 |
2.2.2. Comet-P/E search | 158.7 | 184.9 | 199.5 | 216.2 | 251.7 |
2.2.3. Update results | 170.0 | 209.3 | 244.5 | 266.3 | 330.8 |
2.3. Insertion | 288.6 | 869.6 | 977.5 | 1030.8 | 1443.9 |
2.3.1. Comet-P/E search | 213.7 | 787.8 | 893.9 | 946.9 | 1354.8 |
2.3.2. Update results | 74.9 | 81.8 | 83.6 | 83.9 | 89.1 |
2.4. E-value calculation | 1439.8 | 1496.7 | 1394.5 | 1427.8 | 1430.8 |
B | |||||
The running time ratio | |||||
Comet-P | 1.85% (× 53.92) | 3.66% (× 27.35) | 4.11% (× 24.35) | 4.40% (× 22.73) | 5.75% (× 17.39) |
Comet-E | 6.05% (× 16.52) | 7.92% (× 12.62) | 8.09% (× 12.37) | 8.50% (× 11.77) | 9.78% (× 10.23) |
Deletion | 1.00% | 1.17% | 1.31% | 1.43% | 1.68% |
Insertion | 0.84% | 2.48% | 2.79% | 2.96% | 4.06% |
E-value calculation | 4.20% | 4.27% | 3.98% | 4.10% | 4.02% |
Database size ratio | |||||
|Ddel |/|Dnew|* | 0.02% (8821 / 56,400,212) | 0.11% (64,323 / 57,348,066) | 0.21% (118,748 / 57,471,311) | 0.26% (149,505 / 57,516,232) | 0.44% (252,754 / 58,101,266) |
|Dins|/|Dnew|* | 0.14% (76,988 / 56,400,212) | 1.88% (1,080,344 / 57,348,066) | 2.19% (1,258,014 / 57,471,311) | 2.32% (1,333,692 / 57,516,232) | 3.48% (2,021,975 / 58,101,266) |
Deleted PSMs ratio (|Sdel|/|S|) | 0.02% (226 / 1,121,149) | 0.10% (1121 / 1,121,149) | 0.15% (1717 / 1,121,149) | 0.21% (2410 / 1,121,149) | 0.31% (3426 / 1,121,149) |