Table 3 Results from ablation study—nucleus
From: MSLP: mRNA subcellular localization predictor based on machine learning techniques
Nucleus (4855) | Metric | GNB | DT | RF | XGB | CatB | SVC |
|---|---|---|---|---|---|---|---|
Kmer | Sen | 82.90 | 75.00 | 86.30 | 87.20 | 85.80 | 85.00 |
Spe | 54.40 | 73.50 | 86.30 | 85.30 | 85.90 | 86.40 | |
ACC | 68.60 | 74.30 | 86.30 | 86.30 | 85.80 | 85.70 | |
Pre | 54.40 | 73.50 | 86.30 | 85.30 | 85.90 | 86.40 | |
F1 | 68.00 | 74.30 | 86.30 | 86.20 | 85.80 | 85.70 | |
MCC | 0.389 | 0.485 | 0.726 | 0.725 | 0.717 | 0.714 | |
PseKNC | Sen | 83.20 | 76.10 | 86.50 | 86.50 | 86.30 | 84.80 |
Spe | 54.20 | 72.90 | 85.90 | 86.10 | 85.90 | 85.90 | |
ACC | 68.70 | 74.50 | 86.20 | 86.30 | 86.10 | 85.30 | |
Pre | 54.20 | 72.90 | 85.90 | 86.10 | 85.90 | 85.90 | |
F1 | 68.00 | 74.50 | 86.20 | 86.30 | 86.10 | 85.30 | |
MCC | 0.391 | 0.49 | 0.724 | 0.726 | 0.722 | 0.707 | |
Physiochemical | Sen | 82.60 | 77.80 | 83.70 | 84.90 | 84.80 | 82.10 |
Spe | 49.80 | 72.50 | 83.60 | 82.30 | 80.20 | 75.70 | |
ACC | 66.20 | 75.10 | 83.70 | 83.60 | 82.50 | 78.90 | |
Pre | 49.80 | 72.50 | 83.60 | 82.30 | 80.20 | 75.70 | |
F1 | 65.30 | 75.10 | 83.70 | 83.60 | 82.50 | 78.90 | |
MCC | 0.343 | 0.503 | 0.674 | 0.672 | 0.651 | 0.579 | |
Z-curve | Sen | 80.70 | 73.90 | 83.70 | 85.40 | 85.10 | 82.00 |
Spe | 53.10 | 71.50 | 80.60 | 79.30 | 80.10 | 80.40 | |
ACC | 66.90 | 72.70 | 82.20 | 82.30 | 82.60 | 81.20 | |
Pre | 53.10 | 71.50 | 80.60 | 79.30 | 80.10 | 80.40 | |
F1 | 66.30 | 72.70 | 82.20 | 82.30 | 82.60 | 81.20 | |
MCC | 0.353 | 0.454 | 0.644 | 0.648 | 0.653 | 0.624 | |
All features | Sen | 83.90 | 78.40 | 86.20 | 87.50 | 87.00 | 79.90 |
Spe | 51.30 | 74.20 | 85.30 | 85.70 | 86.20 | 63.90 | |
ACC | 67.60 | 76.30 | 85.70 | 86.60 | 86.60 | 71.90 | |
Pre | 51.30 | 74.20 | 85.30 | 85.70 | 86.20 | 63.90 | |
F1 | 66.70 | 76.30 | 85.70 | 86.60 | 86.60 | 71.70 | |
MCC | 0.373 | 0.526 | 0.715 | 0.732 | 0.732 | 0.443 |