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Table 2 Performance evaluation results based on the RNAStralign benchmark

From: REDfold: accurate RNA secondary structure prediction using residual encoder-decoder network

 

ACC

SEN

PPV

F-Score

Log\(_{10}\)(Time)

REDfold

0.970

0.974

0.971

0.973

3.515

RNAfold

0.519

0.636

0.554

0.592

2.600

RNAstructure

0.515

0.624

0.552

0.586

3.923

Probknot

0.536

0.632

0.571

0.600

4.260

CONTRAfold

0.613

0.708

0.632

0.668

3.499

SPOTRNA

0.703

0.739

0.725

0.732

5.589

Ufold

0.950

0.966

0.944

0.955

5.023

E2Efold

0.671

0.632

0.734

0.679

4.984

MXfold2

0.862

0.892

0.819

0.877

4.157

  1. The measures ACC, SEN, PPV, and F-Score are utilized as the accuracy evaluation, and the computation time was measured for completing the structure prediction of the entire benchmark (in seconds)
  2. Top-performing items are emphasized with bold font
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BMC Bioinformatics

ISSN: 1471-2105

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