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Table 5 Performance evaluation results for the RNAs with pseudoknots based on the ncRNA benchmark

From: REDfold: accurate RNA secondary structure prediction using residual encoder-decoder network

 

ACC

SEN

PPV

F-Score

Log\(_{10}\)(Time)

REDfold

0.923

0.936

0.912

0.924

3.060

RNAfold

0.414

0.505

0.431

0.465

2.182

RNAstructure

0.414

0.500

0.431

0.463

3.459

Probknot

0.434

0.521

0.448

0.482

3.799

CONTRAfold

0.472

0.526

0.448

0.482

2.883

SPOTRNA

0.603

0.554

0.618

0.585

5.204

Ufold

0.852

0.905

0.820

0.861

4.650

E2Efold

0.466

0.415

0.467

0.440

4.646

MXfold2

0.623

0.577

0.639

0.607

3.799

  1. Top-performing items are emphasized with bold font
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BMC Bioinformatics

ISSN: 1471-2105

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