Table 1 ICOR runtime comparable to the BFC, HFC, and URC approaches and significantly faster than ERC approach
From: ICOR: improving codon optimization with recurrent neural networks
Average Time (n. seq = 40) (n. trials = 3) | Time Per Seq | Time Per Codon | Time per NT | |
|---|---|---|---|---|
ERC | 275,587% (749597 ms) (750.517 s, 749.821 s, 748.455 s) | 18,739.9 ms | 1332.50 ms | 444.166 ms |
ICOR | 288% (782 ms) (0.772 s, 0.807 s, 0.766 s) | 19.5 ms | 1.39 ms | 0.463 ms |
BFC | 283% (771 ms) (0.761 s, 0.764 s, 0.787 s) | 19.3 ms | 1.37 ms | 0.456 ms |
HFC | 84% (229 ms) (0.233 s, 0.226 s, 0.228 s) | 5.7 ms | 0.40 ms | 0.136 ms |
URC | 100% (272 ms) (0.271 s, 0.274 s, 0.272 s) | 6.8 ms | 0.48 ms | 0.161 ms |