Fig. 1
From: transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
A schema of the data processing steps performed by the transXpress pipeline. The input data are on the very left in a yellow-colored frame. Initial data pre-treatment tasks are on the left, followed by assembly and tasks executed largely in parallel (annotation and expression analysis). Output data types are in a purple background on the very right. This is a manually simplified version of the directed acyclic graph (DAG) of Snakemake tasks. The DAG can be automatically generated by Snakemake for each transXpress run