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Table 3 GSEA enrichment analysis

From: Integrative analysis of TP53 mutations in lung adenocarcinoma for immunotherapies and prognosis

ID

NES

P value

P adjust

GSEA GO

GOCC_DNA_PACKAGING_COMPLEX

1.976383

8.88E−10

6.01E−06

GOBP_DNA_PACKAGING

1.783477

2.62E−09

8.87E−06

GOBP_DNA_CONFORMATION_CHANGE

1.668193

7.22E−09

1.48E−05

GOBP_NUCLEOSOME_ASSEMBLY

1.902487

8.74E−09

1.48E−05

GOBP_NUCLEOSOME_ORGANIZATION

1.81451

1.28E−08

1.74E−05

GOBP_CHROMATIN_ASSEMBLY_OR_DISASSEMBLY

1.732312

6.18E−08

6.97E−05

GOBP_CHROMOSOME_SEGREGATION

1.616316

8.28E−08

8.01E−05

GOBP_NEGATIVE_REGULATION_OF_GENE_EXPRESSION_EPIGENETIC

1.837812

1.76E−07

0.000149

GOCC_PROTEIN_DNA_COMPLEX

1.723961

2.38E−07

0.000179

GOBP_ORGANELLE_FISSION

1.518382

3.71E−07

0.000232

GOBP_PROTEIN_DNA_COMPLEX_SUBUNIT_ORGANIZATION

1.655031

3.77E−07

0.000232

GOCC_NUCLEAR_CHROMOSOME

1.660653

5.66E−07

0.000315

GOBP_MEIOTIC_CELL_CYCLE_PROCESS

1.712118

6.30E−07

0.000315

GOBP_NUCLEAR_CHROMOSOME_SEGREGATION

1.63877

6.51E−07

0.000315

GOCC_MULTIVESICULAR_BODY

−2.26426

9.31E−07

0.00042

GOBP_CHROMATIN_ORGANIZATION_INVOLVED_IN_REGULATION_OF_TRANSCRIPTION

1.748391

1.08E−06

0.000458

GOCC_CHROMOSOMAL_REGION

1.559684

1.23E−06

0.00049

GOBP_MEIOTIC_CELL_CYCLE

1.642938

1.45E−06

0.000544

GOBP_NEURON_FATE_COMMITMENT

1.902468

2.48E−06

0.000882

GOMF_SERINE_HYDROLASE_ACTIVITY

−1.74924

2.97E−06

0.001006

GOCC_CONDENSED_CHROMOSOME

1.644496

3.86E−06

0.001245

GOCC_CYTOSOLIC_RIBOSOME

−1.93214

4.94E−06

0.001518

GOBP_MITOTIC_NUCLEAR_DIVISION

1.559838

1.16E−05

0.00342

GOBP_MEIOSIS_I_CELL_CYCLE_PROCESS

1.723002

1.29E−05

0.003639

GOBP_DOUBLE_STRAND_BREAK_REPAIR

1.536981

2.65E−05

0.006998

GOBP_REGULATION_OF_GENE_EXPRESSION_EPIGENETIC

1.594629

2.69E−05

0.006998

GOBP_CHROMOSOME_ORGANIZATION_INVOLVED_IN_MEIOTIC_CELL_CYCLE

1.792989

2.87E−05

0.007197

GOBP_MITOTIC_SISTER_CHROMATID_SEGREGATION

1.653645

3.52E−05

0.008504

GOBP_REGULATION_OF_NUCLEAR_DIVISION

1.686256

3.66E−05

0.008541

GOBP_POSITIVE_REGULATION_OF_LYMPHOCYTE_APOPTOTIC_PROCESS

1.88292

4.13E−05

0.009313

GOCC_CILIARY_PLASM

−1.74751

5.04E−05

0.010778

GOCC_BRUSH_BORDER_MEMBRANE

−2.01561

5.23E−05

0.010778

GOCC_DENSE_CORE_GRANULE

1.84658

5.38E−05

0.010778

GOCC_CHROMOSOME_CENTROMERIC_REGION

1.558626

5.42E−05

0.010778

GOBP_MEIOTIC_CHROMOSOME_SEGREGATION

1.732776

5.70E−05

0.011016

GOCC_CONDENSED_NUCLEAR_CHROMOSOME

1.724235

6.16E−05

0.01129

GOBP_SISTER_CHROMATID_SEGREGATION

1.580149

6.22E−05

0.01129

GOBP_CILIUM_MOVEMENT

−1.61535

6.34E−05

0.01129

GOBP_FLUID_TRANSPORT

−2.16657

7.20E−05

0.012489

GOMF_CALCIUM_DEPENDENT_CYSTEINE_TYPE_ENDOPEPTIDASE_ACTIVITY

−2.11512

8.01E−05

0.013254

GOBP_CHROMATIN_SILENCING

1.756168

8.03E−05

0.013254

GOBP_AXONEME_ASSEMBLY

−1.8582

9.71E−05

0.015641

GOBP_HYDROGEN_PEROXIDE_BIOSYNTHETIC_PROCESS

−2.10282

9.95E−05

0.015653

GOCC_BRUSH_BORDER

−1.74031

0.000108

0.016545

GOMF_PEPTIDASE_REGULATOR_ACTIVITY

−1.53378

0.000116

0.017381

GOBP_DNA_DEPENDENT_DNA_REPLICATION

1.588182

0.000119

0.017563

GOBP_CELL_CYCLE_DNA_REPLICATION

1.751897

0.000122

0.017604

GOBP_VASCULAR_PROCESS_IN_CIRCULATORY_SYSTEM

−1.55854

0.000127

0.017821

GOCC_NEURONAL_DENSE_CORE_VESICLE

1.815389

0.000131

0.017821

GOBP_REGULATION_OF_MITOTIC_NUCLEAR_DIVISION

1.662135

0.000134

0.017821

GOBP_POSITIVE_REGULATION_OF_T_CELL_APOPTOTIC_PROCESS

1.813644

0.000134

0.017821

GOCC_BASAL_PART_OF_CELL

−1.52966

0.000145

0.01858

GOMF_ENDOPEPTIDASE_REGULATOR_ACTIVITY

−1.53689

0.000146

0.01858

GOBP_CENTROMERE_COMPLEX_ASSEMBLY

1.746264

0.00018

0.022575

GOBP_DNA_REPLICATION

1.470602

0.000195

0.023955

GOBP_RDNA_HETEROCHROMATIN_ASSEMBLY

1.781571

0.000205

0.024659

GOMF_SERINE_TYPE_ENDOPEPTIDASE_INHIBITOR_ACTIVITY

−1.74739

0.000208

0.024659

GOBP_HYPOTHALAMUS_DEVELOPMENT

1.816552

0.000235

0.026771

GOBP_SENSORY_PERCEPTION_OF_SMELL

1.412688

0.000235

0.026771

GOBP_EPITHELIAL_STRUCTURE_MAINTENANCE

−2.07214

0.000237

0.026771

GOBP_WATER_TRANSPORT

−2.08751

0.000252

0.027924

GOBP_LIPID_OXIDATION

−1.65664

0.000313

0.0342

GOMF_HORMONE_ACTIVITY

1.60724

0.000329

0.035296

GOBP_HISTONE_EXCHANGE

1.722975

0.00034

0.035964

GOBP_HOMOLOGOUS_CHROMOSOME_SEGREGATION

1.7319

0.000353

0.036167

GOBP_MICROTUBULE_BUNDLE_FORMATION

−1.68493

0.000353

0.036167

GOBP_SENSORY_PERCEPTION_OF_CHEMICAL_STIMULUS

1.364093

0.000405

0.04081

GOBP_MAINTENANCE_OF_GASTROINTESTINAL_EPITHELIUM

−2.02779

0.000413

0.04081

GOCC_MICROVILLUS

−1.69866

0.000423

0.04081

GOBP_CELLULAR_MODIFIED_AMINO_ACID_METABOLIC_PROCESS

−1.46584

0.000424

0.04081

GOBP_POSITIVE_REGULATION_OF_LEUKOCYTE_APOPTOTIC_PROCESS

1.788148

0.000428

0.04081

GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_CH_OH_GROUP_OF_DONORS

−1.57945

0.000451

0.042352

GOMF_OLFACTORY_RECEPTOR_ACTIVITY

1.405798

0.000461

0.042709

GOMF_WATER_TRANSMEMBRANE_TRANSPORTER_ACTIVITY

−2.05169

0.000547

0.049989

GSEA KEGG

KEGG_RIBOSOME

−2.32914

2.45E−09

4.57E−07

KEGG_SYSTEMIC_LUPUS_ERYTHEMATOSUS

1.690071

4.76E−05

0.004424

KEGG_ARACHIDONIC_ACID_METABOLISM

−1.82198

0.000218

0.013522

KEGG_LINOLEIC_ACID_METABOLISM

−1.93402

0.000932

0.033491

KEGG_VASCULAR_SMOOTH_MUSCLE_CONTRACTION

−1.54076

0.001054

0.033491

KEGG_COMPLEMENT_AND_COAGULATION_CASCADES

−1.70657

0.00108

0.033491

KEGG_FATTY_ACID_METABOLISM

−1.75378

0.001699

0.045149

GSEA HALLMARK

HALLMARK_E2F_TARGETS

1.806064

5.45E−09

2.72E−07

HALLMARK_G2M_CHECKPOINT

1.70655

4.59E−07

1.15E−05

HALLMARK_FATTY_ACID_METABOLISM

−1.52192

0.000714

0.011892

HALLMARK_SPERMATOGENESIS

1.507066

0.002415

0.030192