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Table 3 Algorithm outputs and the evaluation metrics applied in every case

From: Benchmarking causal reasoning algorithms for gene expression-based compound mechanism of action analysis

Algorithm

Output

Nodes Assessed

CARNIVAL

Default output subnetwork

Full network

CausalR (ScanR)

ScanR subnetwork

Full network

CausalR (Ranked Table)

RankTheHypotheses table

All nodes with p < = 0.05

SigNet

Default output table (overall score)

Top 198 scored nodes