Table 5 Running time of construction kinship matrix for epistatic effect in PyAGH and PEPIS
From: PyAGH: a python package to fast construct kinship matrices based on different levels of omic data
Number of SNPs | PyAGH | PEPIS |
|---|---|---|
4000 | 4 min | 5 min |
10,000 | 16 min | 34 min |
20,000 | 48 min | 121 min |
40,000 | 140 min | 488 min |