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Table 2 Testing datasets

From: Improving variant calling using population data and deep learning

Sample

Ethnicity

Truth variant

Dataset

HG003

Ashkenazi Jewish

v4.2.1 (GRCh38)

35x Illumina WGS [26]

HG003

Ashkenazi Jewish

v4.2.1 (GRCh37)

100x Illumina WES [27]

300x Illumina WES [20]

HG00733

Puerto Rican

DeepVariant v0.10

PacBio SNP calls (GRCh38)

30x Illumina WGS [35]

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BMC Bioinformatics

ISSN: 1471-2105

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