Table 1 Running time (in minutes) and maximum memory usage (in GB) comparisons of the ERStruct algorithm, using MATLAB, Python CPU, and Python GPU implementations on the 1000 Genomes Project data with different MAF filtering thresholds
MAF filtering thresholds | 0.05 | 0.01 | 0.005 | 0.001 |
|---|---|---|---|---|
Running Time |  |  |  |  |
MATLAB | 30.08 | 42.30 | 50.05 | 73.41 |
Python CPU | 34.89 | 66.54 | 84.97 | 137.54 |
Python GPU | 17.60 | 21.91 | 28.96 | 36.42 |
Maximum Memory Usage |  |  |  |  |
MATLAB | 51.55 | 62.22 | 69.54 | 92.50 |
Python CPU | 28.00 | 48.80 | 62.10 | 104.71 |
Python GPU | 10.08 | 15.07 | 18.33 | 28.67 |