Table 3 Average prediction accuracy of models trained with NetsurfP-2.0 DSSP3 dataset
From: AttSec: protein secondary structure prediction by capturing local patterns from attention map
Model | CASP12 | NEW364 | CB513 | TS115 |
|---|---|---|---|---|
DeepProtVec | 62.9 | 64.7 | 63.7 | 66.5 |
DeepSeqVec | 73.0 | 76.0 | 77.0 | 79.0 |
ESM-1b | 76.9 | 82.6 | 83.9 | 84.8 |
ProtT5-XL-U50 | 80.1 | 84.5 | 86.2 | 86.6 |
ProtT5-XXL-U50 | 79.2 | 83.3 | 84.6 | 85.6 |
NetsurfP-3.0 | 77.8 | 83.3 | 85.0 | 85.9 |
NetsurfP-2.0 (profile) | 82.0 | 84.3 | 85.4 | 85.7 |
AttSec(ours) | 80.8 | 85.2 | 86.5 | 87.5 |