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Fig. 1 | BMC Bioinformatics

Fig. 1

From: HISS: Snakemake-based workflows for performing SMRT-RenSeq assembly, AgRenSeq and dRenSeq for the discovery of novel plant disease resistance genes

Fig. 1

Outline of the Snakemake RenSeq workflows. SMRT-RenSeq (green) assembles RenSeq HiFi reads and produces assembly and NLR summary statistics. AgRenSeq (red) takes a metadata file of diversity panel reads and can use the output of SMRT-RenSeq as a reference for k-mer mapping. It outputs highly associated contigs and NLR loci as well as k-mer scoring plots and mapping of contigs to a reference genome. dRenSeq (blue) can use a list of NLRs of interest or the output from AgRenSeq to calculate read coverage

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BMC Bioinformatics

ISSN: 1471-2105

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