Table 1 Datasets and performances of 3D structure reconstructions (score = accuracy + ARI)
Data name | References | #Domains | #Cells | #Initial genes | #Consensus SDGs (≥ 3) of max scores | Average of max scores | Average max accuracy | Average max ARI |
|---|---|---|---|---|---|---|---|---|
Mouse embryo (E7.0) | Peng, Guangdun, et al. [57] | 4 | 41 (sections) | 129 | 87 | 2.00 | 1.00 | 1.00 |
Mouse embryo (E7.5) | Peng, Guangdun, et al. [36] | 7 | 83 (sections) | 295 | 36 | 1.93 | 0.98 | 0.95 |
Mouse brain (ALM) | Tasic, Bosiljka, et al. [39] | 3 | 3809 | 1363 | 61 | 2.00 | 1.00 | 1.00 |
Mouse brain (VISp) | 4 | 7049 | 2377 | 10 | 2.00 | 1.00 | 1.00 | |
Mouse heart (E7.75) | de Soysa, T. Yvanka, et al. [41] | 4 | 1259 | 908 | 19 | 1.99 | 1.00 | 0.99 |
Mouse heart (E8.25) | 7 | 3331 | 1609 | 39 | 1.86 | 0.96 | 0.90 | |
Mouse heart (E9.25) | 7 | 3911 | 1699 | 20 | 1.79 | 0.94 | 0.85 | |
Mouse liver | Halpern, Keren Bahar, et al. [10] | 9 | 1415 | 223 | 66 | 1.30 | 0.82 | 0.48 |
Human heart (PCW 4.5–5) | Asp, Michaela, et al. [40] | 8 | 238 (spots) | 64 | 43 | 1.23 | 0.75 | 0.48 |
Human heart (PCW 6.5) | 8 | 1515 (spots) | 529 | 77 | 1.40 | 0.85 | 0.56 | |
Human heart (PCW 9) | 7 | 1358 (spots) | 193 | 70 | 1.50 | 0.86 | 0.64 | |
Human pancreas organoid (S3-S6) | Veres, Adrian, et al. [47] | 18 | 20,205 | 469 | 83 | 1.15 | 0.76 | 0.39 |