Table 2 Virtual knockout genes and performances of 3D structure reconstructions by running topological clustering 100 times (score = accuracy + ARI)

noKO

NA

1.470

0.828

0.657

1.143

0.721

0.422

Fam64a

3

1.55

0.86

0.70

1.15

0.72

0.43

Kras

3

1.49

0.83

0.66

1.15

0.72

0.42

Ptp4a1

3

1.49

0.83

0.66

1.15

0.72

0.42

Ghitm

5

1.49

0.83

0.66

1.14

0.72

0.42

Bcam

3

1.49

0.83

0.66

1.14

0.72

0.42

Ptplb

3

1.49

0.83

0.67

1.14

0.72

0.42

Tmem246

4

1.48

0.82

0.66

1.14

0.72

0.42

Snrpg

3

1.44

0.81

0.63

1.14

0.72

0.42

Rtn4

3

1.49

0.83

0.66

1.14

0.72

0.42

Tipin

3

1.57

0.86

0.71

1.14

0.72

0.42

Ptgr2

4

1.49

0.83

0.66

1.14

0.72

0.42

Rcor2

3

1.47

0.82

0.66

1.14

0.72

0.42

Mrpl20

3

1.47

0.82

0.65

1.14

0.72

0.42

Prkcdbp

3

1.44

0.81

0.65

1.13

0.72

0.42

Fhl1

4

1.49

0.83

0.66

1.13

0.72

0.41

Cdkn1c

5

1.36

0.81

0.60

1.12

0.72

0.41

3632451O06Rik

4

1.53

0.84

0.69

1.11

0.71

0.40

Ccnd2

5

1.41

0.80

0.62

1.08

0.71

0.37

Ptma

3

1.36

0.79

0.60

1.07

0.70

0.37

Des

3

1.39

0.80

0.60

1.05

0.69

0.36

Des:Ptma

3:3

1.22

0.76

0.46

0.92

0.66

0.25

Des:Ptma:Ccnd2

3:3:5

1.24

0.77

0.49

0.97

0.67

0.30