Fig. 5

Differential expression analysis plotted as a A traditional volcano plot and as a B proportional plot that emphasizes the quantitative abundance of each protein, highlighting in color (red-downregulated and blue-upregulated) the proteins with statistical differences. Plot B is helpful when visualizing the results from a pull-down experiment where the differences are expected to be in the majority. Plot C visualizes the results from a term-enrichment analysis where terms are ranked by p_value